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Sequence coordinates

^ http://edamontology.org/data_2012

A position in a map (for example a genetic map), either a single position (point) or a region / interval.

Synonyms: Map position, Sequence co-ordinates, Locus

Term info

database cross reference
  • Moby:GCP_MapInterval
  • Moby:GenePosition
  • Moby:HitPosition
  • Moby:GCP_MapPoint
  • Moby:Position
  • Moby:GCP_MapPosition
  • Moby:MapPosition
  • Moby:Locus
  • PDBML:_atom_site.id
Subsets

edam, data

Created in

beta12orEarlier

comment

This includes positions in genomes based on a reference sequence. A position may be specified for any mappable object, i.e. anything that may have positional information such as a physical position in a chromosome. Data might include sequence region name, strand, coordinate system name, assembly name, start position and end position.

hasDbXref

Moby:GCP_MapPoint, Moby:HitPosition, PDBML:_atom_site.id, Moby:GCP_MapPosition, Moby:MapPosition, Moby:Locus, Moby:Position, Moby:GenePosition, Moby:GCP_MapInterval