JSON

BioXSD (XML)

^ http://edamontology.org/format_2352

BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming.

Synonyms: BioXSD+XML, BioXSD in XML, BioXSD in XML format, BioXSD XML format, BioXSD XML

Term info

Subsets

formats, edam

Citation

http://doi.org/10.1186/1471-2105-12-494, http://doi.org/10.1093/bioinformatics/btq391, http://doi.org/10.7490/f1000research.1113048.1

Created in

beta12orEarlier

Documentation

http://bioxsd.org, http://bioxsd.org/BioXSD-1.1.xsd

Example

http://bioxsd.org/sequenceRecord.xml+json+yaml.xml, http://bioxsd.org/accession.xml, http://bioxsd.org/sequenceRecord.xml, http://bioxsd.org/exampleFeatureRecords.html

Ontology used

Any ontology allowed, none mandatory. Preferrably with URIs but URIs are not mandatory. Non-ontology terms are also allowed as the last resort in case of a lack of suitable ontology.

Repository

https://github.com/bioxsd/bioxsd

comment

'BioXSD' belongs to the 'BioXSD|GTrack' ecosystem of generic formats. 'BioXSD in XML' is the XML format based on the common, unified 'BioXSD data model', a.k.a. 'BioXSD|BioJSON|BioYAML'.

hasBroadSynonym

BioXSD data model, BioXSD|GTrack, BioXSD format, BioXSD, BioXSD|BioJSON|BioYAML, BioXSD/GTrack

hasDbXref

http://bioxsd.org, http://bioxsd.org/BioXSD-1.1.xsd