JSON

All terms in EDAM

Label Id Description
PSI MI XML (MIF) format_3158 [XML Molecular Interaction Format (MIF), standardised by HUPO PSI MI.]
PSI MI TAB (MITAB) format_3242 [Tabular Molecular Interaction format (MITAB), standardised by HUPO PSI MI.]
GelML format_3249 [GelML is the format for describing the process of gel electrophoresis, standardised by HUPO PSI PS.]
mzQuantML format_3248 [mzQuantML is the format for quantitation values associated with peptides, proteins and small molecules from mass spectra, standardised by HUPO PSI PI. It can be used for outputs of quantitation software for proteomics.]
3D-1D scoring matrix generation operation_2239 [Calculate a 3D-1D scoring matrix from analysis of protein sequence and structural data.]
Data retrieval (sequence profile) operation_2237 [Query a profile data resource and retrieve one or more profile(s) and / or associated annotation.]
Network simulation operation_3562 [Simulate the bevaviour of a biological pathway or network.]
Database comparison operation_3561 [Compare the models or schemas used by two or more databases, or any other general comparison of databases rather than a detailed comparison of the entries themselves.]
Maximum occurence analysis operation_3560 [A method for making numerical assessments about the maximum percent of time that a conformer of a flexible macromolecule can exist and still be compatible with the experimental data.]
Simulated gene expression data generation operation_3566 [Simulate gene expression data, e.g. for purposes of benchmarking.]
RNA-seq time series data analysis operation_3565 [Analyze time series data from an RNA-seq experiment.]
RNA-Seq analysis operation_3680 [Analyze data from RNA-seq experiments.]
Structure file processing operation_2234 [Perform basic (non-analytical) operations on a file of molecular tertiary structural data.]
Chemical redundancy removal operation_3564 [Identify and remove redudancy from a set of small molecule structures.]
Representative sequence identification operation_2233 [Identify a representative sequence from a set of sequences, typically using scores from pair-wise alignment or other comparison of the sequences.]
RNA-seq read count analysis operation_3563 [Analyze read counts from RNA-seq experiments.]
Cytoband format format_3235 [Cytoband format for chromosome cytobands.]
CopasiML format_3239 [CopasiML, the native format of COPASI.]
Biological pathway or network report format format_3166 [Data format for a report of information derived from a biological pathway or network.]
Zoology topic_3500 [Animals, e.g. information on a specific animal genome including molecular sequences, genes and annotation.]