JSON

All terms in EDAM

Label Id Description
Sequence length specification data_0854 [A specification of sequence length(s).]
DNA sense specification data_0853 [The strand of a DNA sequence (forward or reverse).]
Sequence signature model data_0859 [Data files used by motif or profile methods.]
Alignment data_1916 [An alignment of molecular sequences, structures or profiles derived from them.]
Sequence signature data data_0860 [Data concering concerning specific or conserved pattern in molecular sequences and the classifiers used for their identification, including sequence motifs, profiles or other diagnostic element.]
Sequence search results data_0857 [A report of sequence hits and associated data from searching a database of sequences (for example a BLAST search). This will typically include a list of scores (often with statistical evaluation) and a set of alignments for the hits.]
Sequence mask type data_0852 [A label (text token) describing the type of sequence masking to perform.]
Sequence mask character data_0851 [A character used to replace (mask) other characters in a molecular sequence.]
HMMER profile alignment (sequences versus HMMs) format_1421 [Format used by the HMMER package for an alignment of a sequence against a hidden Markov model database.]
Sequence-profile alignment format format_2014 [Data format for a sequence-profile alignment.]
HMMER profile alignment (HMM versus sequences) format_1422 [Format used by the HMMER package for of an alignment of a hidden Markov model against a sequence database.]
Phylip distance matrix format_1423 [Format of PHYLIP phylogenetic distance matrix data.]
Sequence distance matrix format format_2067 [Format of a matrix of genetic distances between molecular sequences.]
ClustalW dendrogram format_1424 [Dendrogram (tree file) format generated by ClustalW.]
Phylip tree raw format_1425 [Raw data file format used by Phylip from which a phylogenetic tree is directly generated or plotted.]
Sequence alignment metadata data_0866 [Report of general information on a sequence alignment, typically include a description, sequence identifiers and alignment score.]
Sequence alignment parameter data_0864 [Some simple value controlling a sequence alignment (or similar 'match') operation.]
Sequence-MEME profile alignment format_1419 [Format for alignment of molecular sequences to MEME profiles (position-dependent scoring matrices) as generated by the MAST tool from the MEME package.]
Sequence-profile alignment data_0869 [Alignment of one or more molecular sequence(s) to one or more sequence profile(s) (each profile typically representing a sequence alignment).]
Profile-profile alignment data_0868 [A profile-profile alignment (each profile typically representing a sequence alignment).]