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All terms in EDAM

Label Id Description
Hybrid sequence alignment construction operation_0293 [Align two or more molecular sequences of different types (for example genomic DNA to EST, cDNA or mRNA).]
Profile-profile alignment operation_0298 [Align sequence profiles (representing sequence alignments).]
3D profile-to-3D profile alignment operation_0299 [Align structural (3D) profiles or templates (representing structures or structure alignments).]
Sequence profile generation operation_0296 [Generate some type of sequence profile (for example a hidden Markov model) from a sequence alignment.]
Sequence identifier (protein) data_2288 [An identifier of protein sequence(s) or protein sequence database entries.]
Sequence identifier (nucleic acid) data_2289 [An identifier of nucleotide sequence(s) or nucleotide sequence database entries.]
3D profile generation operation_0297 [Generate some type of structural (3D) profile or template from a structure or structure alignment.]
Gene expression data format format_3476 [Format of a file of gene expression data, e.g. a gene expression matrix or profile.]
Cytoscape input file format format_3477 [Format of the cytoscape input file of gene expression ratios or values are specified over one or more experiments.]
DNA polymorphism topic_2885 [DNA polymorphism.]
siRNA duplex prediction operation_2008 [Identify or predict siRNA duplexes in RNA.]
trans-regulatory element prediction operation_0443 [Identify or predict functional RNA sequences with a gene regulatory role (trans-regulatory elements) or targets.]
Gene ID (ECK) data_2297 [Identifier of an E. coli K-12 gene from EcoGene Database.]
Gene ID (HGNC) data_2298 [Identifier for a gene approved by the HUGO Gene Nomenclature Committee.]
Gene name data_2299 [The name of a gene, (typically) assigned by a person and/or according to a naming scheme. It may contain white space characters and is typically more intuitive and readable than a gene symbol. It (typically) may be used to identify similar genes in different species and to derive a gene symbol.]
PubChem entry format format_1701 [The format of an entry from PubChem.]
ChemSpider entry format format_1702 [The format of an entry from a database of chemical structures and property predictions.]
ChEBI entry format format_1703 [The format of an entry from Chemical Entities of Biological Interest (ChEBI).]
MSDchem ligand dictionary entry format format_1704 [The format of an entry from the MSDchem ligand dictionary.]
KEGG GLYCAN entry format format_1700 [The format of an entry from the KEGG GLYCAN database.]