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All terms in EDAM

Label Id Description
Operon prediction operation_0435 [Find operons (operators, promoters and genes) in bacteria genes.]
Nucleosome position prediction operation_0432 [Identify or predict nucleosome exclusion sequences (nucleosome free regions) in DNA.]
Biosafety classification data_3719 [Information about the biosafety classification of an organism according to corresponding law.]
Splice site prediction operation_0433 [Identify, predict or analyse splice sites in nucleotide sequences.]
Nucleic acid folding energy calculation operation_1769 [Compute energies of nucleic acid folding, e.g. minimum folding energies for DNA or RNA sequences or energy landscape of RNA mutants.]
Transcriptional regulatory element prediction operation_0438 [Identify or predict transcriptional regulatory motifs, patterns, elements or regions in DNA sequences.]
Translation initiation site prediction operation_0439 [Predict translation initiation sites, possibly by searching a database of sites.]
Coding region prediction operation_0436 [Predict protein-coding regions (CDS or exon) or open reading frames in nucleotide sequences.]
SECIS element prediction operation_0437 [Predict selenocysteine insertion sequence (SECIS) in a DNA sequence.]
Nucleic acid folding family identification operation_1768 [Identify folding families of related RNAs.]
CpG island and isochore detection operation_0430 [Find CpG rich regions in a nucleotide sequence or isochores in genome sequences.]
Restriction site recognition operation_0431 [Find and identify restriction enzyme cleavage sites (restriction sites) in (typically) DNA sequences, for example to generate a restriction map.]
Transcription factor binding site prediction operation_0445 [Identify or predict transcription factor binding sites in DNA sequences.]
Promoter prediction operation_0440 [Identify or predict whole promoters or promoter elements (transcription start sites, RNA polymerase binding site, transcription factor binding sites, promoter enhancers etc) in DNA sequences.]
Exonic splicing enhancer prediction operation_0446 [Identify or predict exonic splicing enhancers (ESE) in exons.]
Annotation retrieval operation_1774 [Retrieve existing annotation (or documentation), typically annotation on a database entity.]
S/MAR prediction operation_0444 [Identify matrix/scaffold attachment regions (MARs/SARs) in DNA sequences.]
Sequence alignment analysis (site correlation) operation_0449 [Analyse correlations between sites in a molecular sequence alignment.]
Correlation operation_3465 [Identify a correlation, i.e. a statistical relationship between two random variables or two sets of data.]
Cultivation parameter data_3724 [Experimental determined parameter for the cultivation of an organism.]