JSON

All terms in EDAM

Label Id Description
Vega-lite format_3970 [Vega-Lite is a high-level grammar of interactive graphics. It provides a concise JSON syntax for rapidly generating visualizations to support analysis. Vega-Lite specifications can be compiled to Vega specifications.]
Docker image format format_3973 [A Docker image is a file, comprised of multiple layers, that is used to execute code in a Docker container. An image is essentially built from the instructions for a complete and executable version of an application, which relies on the host OS kernel.]
BNGL format_3972 [BioNetGen is a format for the specification and simulation of rule-based models of biochemical systems, including signal transduction, metabolic, and genetic regulatory networks.]
Protein chain (all atoms) data_1471 [3D coordinate and associated data for a polypeptide chain tertiary (3D) structure (all atoms).]
C-alpha trace data_1470 [3D coordinate and associated data for a protein tertiary (3D) structure (typically C-alpha atoms only).]
est2genome format format_1316 [Format of a report on exon-intron structure generated by EMBOSS est2genome.]
Gene annotation format format_2031 [Format of a report on a particular locus, gene, gene system or groups of genes.]
WEGO format_3979 [WEGO native format used by the Web Gene Ontology Annotation Plot application. Tab-delimited format with gene names and others GO IDs (columns) with one annotation record per line.]
CONTIG format_3978 [The CONTIG format used for output of the SOAPdenovo alignment program. It contains contig sequences generated without using mate pair information.]
restrict format format_1318 [Report format for restriction enzyme recognition sites used by EMBOSS restrict program.]
restover format format_1319 [Report format for restriction enzyme recognition sites used by EMBOSS restover program.]
GFA 1 format_3975 [Graphical Fragment Assembly captures sequence graphs as the product of an assembly, a representation of variation in genomes, splice graphs in genes, or even overlap between reads from long-read sequencing technology.]
Protein families topic_0724 [Primarily the classification of proteins (from sequence or structural data) into clusters, groups, families etc., curation of a particular protein or protein family, or any other proteins that have been classified as members of a common group.]
ObjTables format_3977 [ObjTables is a toolkit for creating re-usable datasets that are both human and machine-readable, combining the ease of spreadsheets (e.g., Excel workbooks) with the rigor of schemas (classes, their attributes, the type of each attribute, and the possible relationships between instances of classes). ObjTables consists of a format for describing schemas for spreadsheets, numerous data types for science, a syntax for indicating the class and attribute represented by each table and column in a workbook, and software for using schemas to rigorously validate, merge, split, compare, and revision datasets.]
Nucleic acid classification topic_0722 [Classification of nucleic acid sequences and structures.]
GFA 2 format_3976 [Graphical Fragment Assembly captures sequence graphs as the product of an assembly, a representation of variation in genomes, splice graphs in genes, or even overlap between reads from long-read sequencing technology.]
Protein structure (all atoms) data_1469 [3D coordinate and associated data for a protein tertiary (3D) structure (all atoms).]
Linucs ID data_2796 [Identifier of an entry from the GlycosciencesDB database.]
DNA structure data_1464 [3D coordinate and associated data for a DNA tertiary (3D) structure.]
Small molecule structure data_1463 [3D coordinate and associated data for the (3D) structure of a small molecule, such as any common chemical compound.]