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All terms in EDAM

Label Id Description
XYZ format_3877 [The XYZ chemical file format is widely supported by many programs, although many slightly different XYZ file formats coexist (Tinker XYZ, UniChem XYZ, etc.). Basic information stored for each atom in the system are x, y and z coordinates and atom element/atomic number.]
Chromosomes topic_0624 [Study of chromosomes.]
Root-mean-square deviation data_1497 [Root-mean-square deviation (RMSD) is calculated to measure the average distance between superimposed macromolecular coordinates.]
Structure similarity score data_0888 [A value representing molecular structure similarity, measured from structure alignment or some other type of structure comparison.]
Molecular similarity score data_1496 [A score reflecting structural similarities of two molecules.]
DaliLite hit table data_1495 [DaliLite hit table of protein chain tertiary structure alignment data.]
Structural transformation matrix data_1494 [Matrix to transform (rotate/translate) 3D coordinates, typically the transformation necessary to superimpose two molecular structures.]
Protein sequence-structure scoring matrix data_0892 [Matrix of values used for scoring sequence-structure compatibility.]
Protein hydropathy calculation operation_2574 [Analyse the hydrophobic, hydrophilic or charge properties of a protein (from analysis of sequence or structural information).]
Protein properties topic_0123 [The study of the physical and biochemical properties of peptides and proteins, for example the hydrophobic, hydrophilic and charge properties of a protein.]
Tanimoto similarity score data_1498 [A measure of the similarity between two ligand fingerprints.]
mf format_1198 [Chemical structure specified by Molecular Formula (MF), including a count of each element in a compound.]
InChIKey format_1199 [The InChIKey (hashed InChI) is a fixed length (25 character) condensed digital representation of an InChI chemical structure specification. It uniquely identifies a chemical compound.]
InChI format_1197 [Chemical structure specified in IUPAC International Chemical Identifier (InChI) line notation.]
GWAS report data_3231 [Report concerning genome-wide association study experiments.]
Protein-protein docking operation_3899 [Model or simulate protein-protein binding using comparative modelling or other techniques.]
Molecular docking operation_0478 [Model the structure of a protein in complex with a small molecule or another macromolecule.]
Metal-binding site prediction operation_3898 [Predict or detect metal ion-binding sites in proteins.]
Ligand-binding site prediction operation_3897 [Predict or detect ligand-binding sites in proteins; a region of a protein which reversibly binds a ligand for some biochemical purpose, such as transport or regulation of protein function.]
Essential dynamics operation_3891 [Compute Essential Dynamics (ED) on a simulation trajectory: an analysis of molecule dynamics using PCA (Principal Component Analysis) applied to the atomic positional fluctuations.]