Methylation analysis
|
operation_3204 |
[Analyse cytosine methylation states in nucleic acid sequences.] |
Physical mapping
|
operation_2944 |
[Generate a physical (sequence) map of a DNA sequence showing the physical distance (base pairs) between features or landmarks such as restriction sites, cloned DNA fragments, genes and other genetic markers.] |
Base-calling
|
operation_3185 |
[Identify base (nucleobase) sequence from a fluorescence 'trace' data generated by an automated DNA sequencer.] |
Sequence generation
|
operation_0230 |
[Generate a molecular sequence by some means.] |
Trim ends
|
operation_3189 |
[Trim sequences (typically from an automated DNA sequencer) to remove misleading ends.] |
Split read mapping
|
operation_3199 |
[A varient of oligonucleotide mapping where a read is mapped to two separate locations because of possible structural variation.] |
Read mapping
|
operation_3198 |
[Align short oligonucleotide sequences (reads) to a larger (genomic) sequence.] |
Sequence read processing
|
operation_3921 |
[The processing of reads from high-throughput sequencing machines.] |
Genetic variation analysis
|
operation_3197 |
[Analyse a genetic variation, for example to annotate its location, alleles, classification, and effects on individual transcripts predicted for a gene model.] |
Analysis
|
operation_2945 |
[Apply analytical methods to existing data of a specific type.] |
Genotyping
|
operation_3196 |
[Analyse DNA sequence data to identify differences between the genetic composition (genotype) of an individual compared to other individual's or a reference sequence.] |
Sequence assembly validation
|
operation_3180 |
[Evaluate a DNA sequence assembly, typically for purposes of quality control.] |
Validation
|
operation_2428 |
[Validate some data.] |
Sequence assembly
|
data_0925 |
[An assembly of fragments of a (typically genomic) DNA sequence.] |
Sequence assembly
|
topic_0196 |
[The assembly of fragments of a DNA sequence to reconstruct the original sequence.] |
Sequence assembly report
|
data_3181 |
[An informative report about a DNA sequence assembly.] |
Sequence assembly visualisation
|
operation_3184 |
[Render and visualise a DNA sequence assembly.] |
Sequence visualisation
|
operation_0564 |
[Visualise, format or render a molecular sequence or sequences such as a sequence alignment, possibly with sequence features or properties shown.] |
Localised reassembly
|
operation_3183 |
[Reconstruction of a sequence assembly in a localised area.] |
Sequence assembly
|
operation_0310 |
[Combine (align and merge) overlapping fragments of a DNA sequence to reconstruct the original sequence.] |