JSON

All terms in EDAM

Label Id Description
Gene expression matrix data_3112 [The final processed (normalised) data for a set of hybridisations in a microarray experiment.]
Embryo report data_2724 [Annotation on an embryo or concerning embryological development.]
Ensembl transcript ID data_2725 [Unique identifier for a gene transcript from the Ensembl database.]
Transcript ID data_2769 [Identifier of a RNA transcript.]
Ensembl ID data_2610 [Identifier of an entry (exon, gene, transcript or protein) from the Ensembl database.]
Inhibitor annotation data_2726 [An informative report on one or more small molecules that are enzyme inhibitors.]
Dinucleotide property data_2720 [Physicochemical property data for one or more dinucleotides.]
DiProDB ID data_2721 [Identifier of an dinucleotide property from the DiProDB database.]
Protein features report (disordered structure) data_2722 [disordered structure in a protein.]
Loom format_3913 [The Loom file format is based on HDF5, a standard for storing large numerical datasets. The Loom format is designed to efficiently hold large omics datasets. Typically, such data takes the form of a large matrix of numbers, along with metadata for the rows and columns.]
Zarr format_3915 [The Zarr format is an implementation of chunked, compressed, N-dimensional arrays for storing data.]
msh format_3911 [Mash sketch is a format for sequence / sequence checksum information. To make a sketch, each k-mer in a sequence is hashed, which creates a pseudo-random identifier. By sorting these hashes, a small subset from the top of the sorted list can represent the entire sequence.]
trr format_3910 [Format of trr files that contain the trajectory of a simulation experiment used by GROMACS.]
Tertiary structure format format_2033 [Data format for a molecular tertiary structure.]
Trajectory format (text) format_3868 [Textual file format to store trajectory information for a 3D structure .]
Gene ID (Xenbase) data_2738 [A unique identifier of gene in the Xenbase database.]
Gap extension penalty (integer) data_1406 [A simple floating point number defining the penalty for extending a gap in an alignment.]
BpForms format_3909 [BpForms is a string format for concretely representing the primary structures of biopolymers, including DNA, RNA, and proteins that include non-canonical nucleic and amino acids. See https://www.bpforms.org for more information.]
Chemical formula format format_2035 [Text format of a chemical formula.]
Gap opening penalty (float) data_1405 [A simple floating point number defining the penalty for opening a gap in an alignment.]