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Bioinformatics operations, data types, formats, identifiers and topics
EDAM
All terms in EDAM
Label
Id
Description
Protein domain ID
data_1038
[Identifier of a protein structural domain.]
DBD ID
data_2716
[Identifier of a predicted transcription factor from the DBD database.]
Oligonucleotide probe annotation
data_2717
[General annotation on an oligonucleotide probe, or a set of probes.]
Microarray metadata
data_3115
[Annotation on the array itself used in a microarray experiment.]
Probes and primers
topic_0632
[Molecular probes (e.g. a peptide probe or DNA microarray probe) or PCR primers and hybridisation oligos in a nucleic acid sequence.]
Oligonucleotide ID
data_2718
[Identifier of an oligonucleotide from a database.]
dbProbe ID
data_2719
[Identifier of an oligonucleotide probe from the dbProbe database.]
Protein ID (CORUM)
data_2713
[Unique identifier for a protein complex from the CORUM database.]
CDD PSSM-ID
data_2714
[Unique identifier of a position-specific scoring matrix from the CDD database.]
Sequence profile ID
data_1115
[Identifier of a sequence profile.]
Protein ID (CuticleDB)
data_2715
[Unique identifier for a protein from the CuticleDB database.]
CleanEx dataset code
data_2710
[An identifier of (typically a list of) gene expression experiments catalogued in the CleanEx database.]
Experiment annotation ID
data_1078
[Identifier of an entry from a database of microarray data.]
Genome report
data_2711
[A human-readable collection of information concerning a genome as a whole.]
Promoter ID
data_2727
[An identifier of a promoter of a gene that is catalogued in a database.]
EST accession
data_2728
[Identifier of an EST sequence.]
COGEME EST ID
data_2729
[Identifier of an EST sequence from the COGEME database.]
Protein ID (DisProt)
data_2723
[Unique identifier for a protein from the DisProt database.]
MTX
format_3916
[The Matrix Market matrix (MTX) format stores numerical or pattern matrices in a dense (array format) or sparse (coordinate format) representation.]
Sequence tag profile
data_2535
[Output from a serial analysis of gene expression (SAGE), massively parallel signature sequencing (MPSS) or sequencing by synthesis (SBS) experiment. In all cases this is a list of short sequence tags and the number of times it is observed.]