JSON

All terms in EDAM

Label Id Description
Protein secondary structure topic_0694 [Protein secondary structure or secondary structure alignments.]
Nucleic acid structure report data_3128 [A human-readable collection of information about regions within a nucleic acid sequence which form secondary or tertiary (3D) structures.]
Protein features report (repeats) data_3129 [short repetitive subsequences (repeat sequences) in a protein sequence.]
Nucleic acid features (difference and change) data_3122 [A report on features in a nucleic acid sequence that indicate changes to or differences between sequences.]
Nucleic acid features (immunoglobulin gene structure) data_3140 [A report on predicted or actual immunoglobulin gene structure including constant, switch and variable regions and diversity, joining and variable segments.]
SCOP class data_3141 [Information on a 'class' node from the SCOP database.]
WIG format_3005 [Wiggle format (WIG) of a sequence annotation track that consists of a value for each sequence position. Typically to be displayed in a genome browser.]
SCOP fold data_3142 [Information on a 'fold' node from the SCOP database.]
bigBed format_3004 [bigBed format for large sequence annotation tracks, similar to textual BED format.]
SCOP superfamily data_3143 [Information on a 'superfamily' node from the SCOP database.]
Structure analysis operation_2480 [Analyse known molecular tertiary structures.]
ACE format_3001 [ACE sequence assembly format including contigs, base-call qualities, and other metadata (version Aug 1998 and onwards).]
AB1 format_3000 [AB1 binary format of raw DNA sequence reads (output of Applied Biosystems' sequencing analysis software). Contains an electropherogram and the DNA base sequence.]
Protein tertiary structure topic_0698 [Protein tertiary structures.]
RNA structure topic_0697 [RNA secondary or tertiary structure and alignments.]
PSL format_3007 [PSL format of alignments, typically generated by BLAT or psLayout. Can be displayed in a genome browser like a sequence annotation track.]
bigWig format_3006 [bigWig format for large sequence annotation tracks that consist of a value for each sequence position. Similar to textual WIG format.]
2bit format_3009 [2bit binary format of nucleotide sequences using 2 bits per nucleotide. In addition encodes unknown nucleotides and lower-case 'masking'.]
MAF format_3008 [Multiple Alignment Format (MAF) supporting alignments of whole genomes with rearrangements, directions, multiple pieces to the alignment, and so forth.]
Protein sequence analysis operation_2479 [Analyse a protein sequence (using methods that are only applicable to protein sequences).]