JSON

All terms in EDAM

Label Id Description
RNA annotation format format_3865 [A "placeholder" concept for formats of annotated RNA data, including e.g. microRNA and RNA-Seq data.]
mirGFF3 format_3864 [mirGFF3 is a common format for microRNA data resulting from small-RNA RNA-Seq workflows.]
Trajectory data data_3870 [Dynamic information of a structure molecular system coming from a molecular simulation: XYZ 3D coordinates (sometimes with their associated velocities) for every atom along time.]
OrthoXML format_3850 [OrthoXML is designed broadly to allow the storage and comparison of orthology data from any ortholog database. It establishes a structure for describing orthology relationships while still allowing flexibility for database-specific information to be encapsulated in the same format.]
Laboratory information management topic_0607 [Laboratory management and resources, for example, catalogues of biological resources for use in the lab including cell lines, viruses, plasmids, phages, DNA probes and primers and so on.]
Cell and tissue culture topic_0608 [General cell culture or data on a specific cell lines.]
SeqXML format_3852 [SeqXML is an XML Schema to describe biological sequences, developed by the Stockholm Bioinformatics Centre.]
PSDML format_3851 [Tree structure of Protein Sequence Database Markup Language generated using Matra software.]
Literature data resources topic_0606 [Data resources for the biological or biomedical literature, either a primary source of literature or some derivative.]
Vienna RNA structure constraints data_1592 [Structure constraints used by the Vienna package.]
Vienna RNA parameters data_1591 [RNA parameters used by the Vienna package.]
DNA base trimer roll angles data data_1590 [DNA base trimer roll angles data.]
Waters RAW format_3858 [Proprietary file format for mass spectrometry data from Waters.]
CWL format_3857 [Common Workflow Language (CWL) format for description of command-line tools and workflows.]
JCAMP-DX format_3859 [A standardized file format for data exchange in mass spectrometry, initially developed for infrared spectrometry.]
UniRef XML format_3854 [XML format for the UniRef reference clusters.]
UniParc XML format_3853 [XML format for the UniParc database.]
Protein modifications topic_0601 [Protein chemical modifications, e.g. post-translational modifications.]
Nucleic acid entropy data_1585 [Entropy of hybridised or double stranded nucleic acid (DNA or RNA/DNA).]
Nucleic acid enthalpy data_1584 [Enthalpy of hybridised or double stranded nucleic acid (DNA or RNA/DNA).]