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All terms in EDAM

Label Id Description
Nucleic acid melting profile data_1583 [Data on the dissociation characteristics of a double-stranded nucleic acid molecule (DNA or a DNA/RNA hybrid) during heating.]
DNA base pair twist angle data data_1589 [DNA base pair twist angle data.]
DNA base pair stacking energies data data_1588 [DNA base pair stacking energies data.]
Nucleic acid stitch profile data_1587 [Stitch profile of hybridised or double stranded nucleic acid (DNA or RNA/DNA).]
Nucleic acid melting temperature data_1586 [Melting temperature of hybridised or double stranded nucleic acid (DNA or RNA/DNA).]
GROMACS itp format_3883 [GROMACS itp files (include topology) contain structure topology information, and are tipically included in GROMACS topology files (GROMACS top). Itp files are used to define individual (or multiple) components of a topology as a separate file. This is particularly useful if there is a molecule that is used frequently, and also reduces the size of the system topology file, splitting it in different parts.]
FF parameter format format_3884 [Format of force field parameter files, which store the set of parameters (charges, masses, radii, bond lengths, bond dihedrals, etc.) that are essential for the proper description and simulation of a molecular system.]
Topology format format_3879 [Format of topology files; containing the static information of a structure molecular system that is needed for a molecular simulation.]
Scents topic_0618 [A database about scents.]
PSF format_3882 [X-Plor Protein Structure Files (PSF) are structure topology files used by NAMD and CHARMM molecular simulations programs. PSF files contain six main sections of interest: atoms, bonds, angles, dihedrals, improper dihedrals (force terms used to maintain planarity) and cross-terms.]
BinPos format_3885 [Scripps Research Institute BinPos format is a binary formatted file to store atom coordinates.]
Organelles topic_0616 [A specific organelle, or organelles in general, typically the genes and proteins (or genome and proteome).]
Topology data data_3872 [Static information of a structure molecular system that is needed for a molecular simulation: the list of atoms, their non-bonded parameters for Van der Waals and electrostatic interactions, and the complete connectivity in terms of bonds, angles and dihedrals.]
Ribosomes topic_0617 [Ribosomes, typically of ribosome-related genes and proteins.]
OBO-XML format_2550 [OBO ontology XML format.]
OBO format format_2196 [A serialisation format conforming to the Open Biomedical Ontologies (OBO) model.]
AMBER top format_3881 [AMBER Prmtop file (version 7) is a structure topology text file divided in several sections designed to be parsed easily using simple Fortran code. Each section contains particular topology information, such as atom name, charge, mass, angles, dihedrals, etc.]
GROMACS top format_3880 [GROMACS MD package top textual files define an entire structure system topology, either directly, or by including itp files.]
UniGene entry format format_1228 [Format of an entry from UniGene.]
Electron microscopy topic_0611 [The study of matter by studying the interference pattern from firing electrons at a sample, to analyse structures at resolutions higher than can be achieved using light.]