JSON

All terms in EDAM

Label Id Description
Phylogenetic tree distances calculation operation_0557 [Compare two or more phylogenetic trees to calculate distances between trees.]
Phylogenetic tree annotation operation_0558 [Annotate a phylogenetic tree with terms from a controlled vocabulary.]
Phylogenetic tree topology analysis operation_0551 [Analyse the shape (topology) of a phylogenetic tree.]
Phylogenetic tree bootstrapping operation_0552 [Apply bootstrapping or other measures to estimate confidence of a phylogenetic tree.]
DNA substitution modelling operation_0550 [Identify a plausible model of DNA substitution that explains a molecular (DNA or protein) sequence alignment.]
Sequence cluster visualisation operation_0566 [Visualise, format or render sequence clusters.]
Sequence cluster data_1235 [A set of sequences that have been clustered or otherwise classified as belonging to a group including (typically) sequence cluster information.]
Phylogenetic tree visualisation operation_0567 [Render or visualise a phylogenetic tree.]
Sequence alignment visualisation operation_0565 [Visualise, format or print a molecular sequence alignment.]
RNA secondary structure visualisation operation_0568 [Visualise RNA secondary structure, knots, pseudoknots etc.]
Protein secondary structure visualisation operation_0569 [Render and visualise protein secondary structure.]
Molecular simulation data data_3842 [Data coming from molecular simulations, computer "experiments" on model molecules.]
Sequence alignment formatting operation_0562 [Reformat (a file or other report of) molecular sequence alignment(s).]
Codon usage table formatting operation_0563 [Reformat a codon usage table.]
DNA vaccine design operation_0560 [Predict or optimise DNA to elicit (via DNA vaccination) an immunological response.]
Sequence formatting operation_0561 [Reformat (a file or other report of) molecular sequence(s).]
HMMER3 format_3329 [HMMER profile HMM file for HMMER versions 3.x]
Phylogenetic inference (method centric) operation_0539 [Construct a phylogenetic tree using a specific method.]
HMMER2 format_3328 [HMMER profile HMM file for HMMER versions 2.x]
BAI format_3327 [BAM indexing format]