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All terms in EDAM

Label Id Description
Residue contact calculation (residue-nucleic acid) operation_1832 [Calculate protein residue contacts with nucleic acids in a structure.]
Free cysteine detection operation_1830 [Detect free cysteines in a protein structure.]
Residue contact calculation (residue-negative ion) operation_1835 [Calculate ion contacts in a structure (all ions for all side chain atoms).]
Multiple structure alignment operation_0504 [Align (superimpose) more than two molecular tertiary structures.]
Structure alignment (protein) operation_0505 [Align protein tertiary structures.]
Residue bump detection operation_1836 [Detect 'bumps' between residues in a structure, i.e. those with pairs of atoms whose Van der Waals' radii interpenetrate more than a defined distance.]
RNA secondary structure alignment operation_0502 [Align RNA secondary structures.]
RNA secondary structure data_0880 [An informative report of secondary structure (predicted or real) of an RNA molecule.]
RNA secondary structure alignment data_0881 [Alignment of the (1D representations of) secondary structure of two or more RNA molecules.]
Pairwise structure alignment operation_0503 [Align (superimpose) exactly two molecular tertiary structures.]
Protein-metal contact calculation operation_1834 [Calculate protein residue contacts with metal in a structure.]
CT format_3309 [File format of a CT (Connectivity Table) file from the RNAstructure package.]
RNA secondary structure format format_2076 [Format for secondary structure (predicted or real) of an RNA molecule.]
Consensus tree construction operation_0555 [Compare two or more phylogenetic trees to produce a consensus tree.]
Phylogenetic inference operation_0323 [Construct a phylogenetic tree.]
Phylogenetic sub/super tree construction operation_0556 [Compare two or more phylogenetic trees to detect subtrees or supertrees.]
Gene tree construction operation_0553 [Construct a "gene tree" which represents the evolutionary history of the genes included in the study. This can be used to predict families of genes and gene function based on their position in a phylogenetic tree.]
Phylogenomics topic_0194 [The integrated study of evolutionary relationships and whole genome data, for example, in the analysis of species trees, horizontal gene transfer and evolutionary reconstruction.]
Allele frequency distribution analysis operation_0554 [Analyse a phylogenetic tree to identify allele frequency distribution and change that is subject to evolutionary pressures (natural selection, genetic drift, mutation and gene flow). Identify type of natural selection (such as stabilizing, balancing or disruptive).]
Immunogenicity prediction operation_0559 [Predict and optimise peptide ligands that elicit an immunological response.]