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All terms in EDAM

Label Id Description
Cysteine bridge detection operation_1829 [Detect cysteine bridges (from coordinate data) in a protein structure.]
Full torsion angle calculation operation_1826 [Calculate for each residue in a protein structure all its torsion angles.]
Cysteine torsion angle calculation operation_1827 [Calculate for each cysteine (bridge) all its torsion angles.]
Domainatrix 3D-1D scoring matrix format format_1500 [Format of a matrix of 3D-1D scores used by the EMBOSS Domainatrix applications.]
Protein residue surface calculation (vacuum accessible) operation_1820 [Calculate the solvent accessibility ('vacuum accessible surface') for each residue in a structure. This is the accessibility of the residue when taken out of the protein together with the backbone atoms of any residue it is covalently bound to.]
Protein residue surface calculation (accessible molecular) operation_1821 [Calculate the solvent accessibility ('accessible molecular surface') for each residue in a structure.]
Protein surface calculation (accessible) operation_1824 [Calculate the solvent accessibility ('accessible surface') for a structure as a whole.]
Backbone torsion angle calculation operation_1825 [Calculate for each residue in a protein structure all its backbone torsion angles.]
Protein residue surface calculation (vacuum molecular) operation_1822 [Calculate the solvent accessibility ('vacuum molecular surface') for each residue in a structure. This is the accessibility of the residue when taken out of the protein together with the backbone atoms of any residue it is covalently bound to.]
Protein surface calculation (accessible molecular) operation_1823 [Calculate the solvent accessibility ('accessible molecular surface') for a structure as a whole.]
Salt bridge calculation operation_1839 [Calculate (and possibly score) salt bridges in a protein structure.]
Pairwise structure alignment generation (global) operation_0508 [Globally align (superimpose) exactly two molecular tertiary structures.]
Local structure alignment operation_0509 [Locally align (superimpose) two or more molecular tertiary structures.]
Residue symmetry contact calculation operation_1837 [Calculate the number of symmetry contacts made by residues in a protein structure.]
Structure alignment (RNA) operation_0506 [Align RNA tertiary structures.]
Pairwise structure alignment generation (local) operation_0507 [Locally align (superimpose) exactly two molecular tertiary structures.]
Residue contact calculation (residue-ligand) operation_1838 [Calculate contacts between residues and ligands in a protein structure.]
Metal-bound cysteine detection operation_1831 [Detect cysteines that are bound to metal in a protein structure.]
Secondary structure alignment generation operation_0500 [Align molecular secondary structure (represented as a 1D string).]
Protein secondary structure alignment generation operation_0501 [Align protein secondary structures.]