JSON

All terms in EDAM

Label Id Description
PDB file sequence retrieval operation_1845 [Extract a molecular sequence from a PDB file.]
SAGE data processing operation_0528 [Process (read and / or write) serial analysis of gene expression (SAGE) data.]
MPSS data processing operation_0529 [Process (read and / or write) massively parallel signature sequencing (MPSS) data.]
3D EM Map data_3805 [Structural 3D model (volume map) from electron microscopy.]
PCR primer design (for methylation PCRs) operation_0522 [Predict primers for methylation PCRs.]
3D EM Mask data_3806 [Annotation on a structural 3D EM Map from electron microscopy. This might include one or several locations in the map of the known features of a particular macromolecule.]
Mapping assembly operation_0523 [Sequence assembly by combining fragments using an existing backbone sequence, typically a reference genome.]
EM Movie data_3807 [Raw DDD movie acquisition from electron microscopy.]
PCR primer design (for conserved primers) operation_0520 [Predict primers that are conserved across multiple genomes or species.]
EM Micrograph data_3808 [Raw acquistion from electron microscopy or average of an aligned DDD movie.]
PCR primer design (based on gene structure) operation_0521 [Predict primers based on gene structure.]
EST assembly operation_0526 [Sequence assembly for EST sequences (transcribed mRNA).]
Sequence tag mapping operation_0527 [Make sequence tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data.]
De-novo assembly operation_0524 [Sequence assembly by combining fragments without the aid of a reference sequence or genome.]
Genome assembly operation_0525 [The process of assembling many short DNA sequences together such thay they represent the original chromosomes from which the DNA originated.]
Protein cysteine and disulfide bond assignment operation_1850 [Assign cysteine bonding state and disulfide bond partners in protein structures.]
Protein structure assignment operation_0320 [Assign a protein tertiary structure (3D coordinates), or other aspects of protein structure, from raw experimental data.]
Tau angle calculation operation_1828 [For each amino acid in a protein structure calculate the backbone angle tau.]
aaindex format_1504 [Amino acid index format used by the AAindex database.]
Amino acid index format format_2017 [Data format for an amino acid index.]