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All terms in EDAM

Label Id Description
Nucleic acid structure comparison topic_2280 [The comparison two or more nucleic acid (typically RNA) secondary or tertiary structures.]
PCR primer design (for gene transcription profiling) operation_0519 [Predict primers for gene transcription profiling.]
Structure formatting operation_1848 [Reformat (a file or other report of) tertiary structure data.]
PCR primer design (for large scale sequencing) operation_0517 [Predict primers for large scale sequencing.]
PCR primer design (for genotyping polymorphisms) operation_0518 [Predict primers for genotyping polymorphisms, for example single nucleotide polymorphisms (SNPs).]
Proline mutation value calculation operation_1842 [Calculate for each position in a protein structure the chance that a proline, when introduced at this position, would increase the stability of the whole protein.]
Profile-profile alignment (pairwise) operation_0511 [Align exactly two molecular profiles.]
Sequence alignment generation (multiple profile) operation_0512 [Align two or more molecular profiles.]
Residue packing validation operation_1843 [Identify poorly packed residues in protein structures.]
Protein structure validation operation_0321 [Evaluate the quality or correctness a protein three-dimensional model.]
Global structure alignment operation_0510 [Globally align (superimpose) two or more molecular tertiary structures.]
Structure alignment operation_0295 [Align (superimpose) molecular tertiary structures.]
Rotamer likelihood prediction operation_1841 [Predict rotamer likelihoods for all 20 amino acid types at each position in a protein structure.]
HET group detection operation_1846 [Identify HET groups in PDB files.]
Data retrieval (tool metadata) operation_0515 [Search and retrieve names of or documentation on bioinformatics tools, for example by keyword or which perform a particular function.]
Data retrieval (database metadata) operation_0516 [Search and retrieve names of or documentation on bioinformatics databases or query terms, for example by keyword.]
DSSP secondary structure assignment operation_1847 [Determine for residue the DSSP determined secondary structure in three-state (HSC).]
Protein geometry validation operation_1844 [Validate protein geometry, for example bond lengths, bond angles, torsion angles, chiralities, planaraties etc. An example is validation of a Ramachandran plot of a protein structure.]
3D profile-to-3D profile alignment (pairwise) operation_0513 [Align exactly two molecular Structural (3D) profiles.]
Structural profile alignment generation (multiple) operation_0514 [Align two or more molecular 3D profiles.]