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All terms in EDAM

Label Id Description
JPG format_3579 [Joint Picture Group file format for lossy graphics file.]
IDAT format_3578 [Proprietary file format for (raw) BeadArray data used by genomewide profiling platforms from Illumina Inc. This format is output directly from the scanner and stores summary intensities for each probe-type on an array.]
Raw microarray data data_3110 [Raw data (typically MIAME-compliant) for hybridisations from a microarray experiment.]
Metagenomic sequencing topic_3837 [Approach which samples, in parallel, all genes in all organisms present in a given sample, e.g. to provide insight into biodiversity and function.]
Primer removal operation_3237 [Remove forward and/or reverse primers from nucleic acid sequences (typically PCR products).]
Gene expression QTL analysis operation_3232 [Combine classical quantitative trait loci (QTL) analysis with gene expression profiling, for example, to describe describe cis- and trans-controlling elements for the expression of phenotype associated genes.]
Expression analysis operation_2495 [Process (read and/or write) expression data from experiments measuring molecules (e.g. omics data), including analysis of one or more expression profiles, typically to interpret them in functional terms.]
Read depth analysis operation_3230 [Analyse mapping density (read depth) of (typically) short reads from sequencing platforms, for example, to detect deletions and duplications.]
Sequence name data_2154 [Any arbitrary name of a molecular sequence.]
Sequence identifier data_1063 [An identifier of molecular sequence(s) or entries from a molecular sequence database.]
Date data_2156 [A temporal date.]
NMR spectrum data_3488 [Spectral information for a molecule from a nuclear magnetic resonance experiment.]
Word composition data_2157 [Word composition data for a molecular sequence.]
Copy number estimation operation_3233 [Estimate the number of copies of loci of particular gene(s) in DNA sequences typically from gene-expression profiling technology based on microarray hybridisation-based experiments. For example, estimate copy number (or marker dosage) of a dominant marker in samples from polyploid plant cells or tissues, or chromosomal gains and losses in tumors.]
Copy number variation detection operation_3961 [Identify where sections of the genome are repeated and the number of repeats in the genome varies between individuals.]
Sequence set (stream) data_2173 [A collection of multiple molecular sequences and (typically) associated metadata that is intended for sequential processing.]
FlyBase secondary identifier data_2174 [Secondary identifier of an object from the FlyBase database.]
Gene methylation analysis operation_3207 [Analysing the DNA methylation of specific genes or regions of interest.]
Whole genome methylation analysis operation_3206 [Measure the overall level of methyl cytosines in a genome from analysis of experimental data, typically from chromatographic methods and methyl accepting capacity assay.]
Methylation calling operation_3205 [Determine cytosine methylation status of specific positions in a nucleic acid sequences.]